Articles

Journal of Biomedical Semantics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 3 Supplement 2

Proceedings of Ontologies in Biomedicine and Life Sciences (OBML 2011)

Proceedings

Ontologies in Biomedicine and Life Sciences (OBML 2011)

Berlin, Germany

6-7 October 2011

Edited by Heinrich Herre, Robert Hoehndorf and Frank Loebe

Conference website

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology

Anika Oellrich, Georgios V Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann Journal of Biomedical Semantics 2012, 3(Suppl 2):S1 (21 September 2012)

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Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology

Djamila Seddig-Raufie, Ludger Jansen, Daniel Schober, Martin Boeker, Niels Grewe, Stefan Schulz Journal of Biomedical Semantics 2012, 3(Suppl 2):S2 (21 September 2012)

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Open biomedical pluralism: formalising knowledge about breast cancer phenotypes

Aleksandra Sojic, Oliver Kutz Journal of Biomedical Semantics 2012, 3(Suppl 2):S3 (21 September 2012)

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OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4

Daniel Schober, Ilinca Tudose, Vojtech Svatek, Martin Boeker Journal of Biomedical Semantics 2012, 3(Suppl 2):S4 (21 September 2012)

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Towards improving phenotype representation in OWL

Frank Loebe, Frank Stumpf, Robert Hoehndorf, Heinrich Herre Journal of Biomedical Semantics 2012, 3(Suppl 2):S5 (21 September 2012)

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Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes

Georgios V Gkoutos, Robert Hoehndorf Journal of Biomedical Semantics 2012, 3(Suppl 2):S6 (21 September 2012)

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Towards an ontological representation of morbidity and mortality in Description Logics

Filipe Santana, Fred Freitas, Roberta Fernandes, Zulma Medeiros, Daniel Schober Journal of Biomedical Semantics 2012, 3(Suppl 2):S7 (21 September 2012)

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Continuation-like semantics for modeling structural process anomalies

Niels Grewe Journal of Biomedical Semantics 2012, 3(Suppl 2):S8 (21 September 2012)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Mechanisms in biomedical ontology

Johannes Röhl Journal of Biomedical Semantics 2012, 3(Suppl 2):S9 (21 September 2012)

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