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Journal of Biomedical Semantics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 2 Supplement 5

Proceedings of the Fourth International Symposium on Semantic Mining in Biomedicine (SMBM)

Research

Fourth International Symposium on Semantic Mining in Biomedicine (SMBM)

Hinxton, UK

25-26 October 2010

Edited by Nigel Collier, Udo Hahn, Sampo Pyysalo, Dietrich Rebholz-Schuhmann and Fabio Rinaldi

Introduction   Open Access

Towards mature use of semantic resources for biomedical analyses

D Rebholz-Schuhmann, F Rinaldi, S Pyysalo, N Collier, U Hahn Journal of Biomedical Semantics 2011, 2(Suppl 5):I1 (6 October 2011)

Full text | PDF | PubMed

Research   Open Access

Ontology design patterns to disambiguate relations between genes and gene products in GENIA

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Sampo Pyysalo, Tomoko Ohta, Anika Oellrich, Dietrich Rebholz-Schuhmann Journal of Biomedical Semantics 2011, 2(Suppl 5):S1 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Event extraction for DNA methylation

Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun’ichi Tsujii Journal of Biomedical Semantics 2011, 2(Suppl 5):S2 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Improving the extraction of complex regulatory events from scientific text by using ontology-based inference

Jung-jae Kim, Dietrich Rebholz-Schuhmann Journal of Biomedical Semantics 2011, 2(Suppl 5):S3 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Automatic extraction of semantic relations between medical entities: a rule based approach

Asma Ben Abacha, Pierre Zweigenbaum Journal of Biomedical Semantics 2011, 2(Suppl 5):S4 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

An analysis of gene/protein associations at PubMed scale

Sampo Pyysalo, Tomoko Ohta, Jun’ichi Tsujii Journal of Biomedical Semantics 2011, 2(Suppl 5):S5 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Coreference based event-argument relation extraction on biomedical text

Katsumasa Yoshikawa, Sebastian Riedel, Tsutomu Hirao, Masayuki Asahara, Yuji Matsumoto Journal of Biomedical Semantics 2011, 2(Suppl 5):S6 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Predicting speculation: a simple disambiguation approach to hedge detection in biomedical literature

Erik Velldal Journal of Biomedical Semantics 2011, 2(Suppl 5):S7 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Linguistic scope-based and biological event-based speculation and negation annotations in the BioScope and Genia Event corpora

Veronika Vincze, György Szarvas, György Móra, Tomoko Ohta, Richárd Farkas Journal of Biomedical Semantics 2011, 2(Suppl 5):S8 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

OMG U got flu? Analysis of shared health messages for bio-surveillance

Nigel Collier, Nguyen Son, Ngoc Nguyen Journal of Biomedical Semantics 2011, 2(Suppl 5):S9 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Twitter updates could be used to detect emerging disease outbreaks according to this study, which found a correlation between 'self-protective behavior' in Tweets and WHO/NREVSS data for A(H1N1) during the 2009-2010 influenza season.

Research   Open Access

Towards cross-lingual alerting for bursty epidemic events

Nigel Collier Journal of Biomedical Semantics 2011, 2(Suppl 5):S10 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

Dietrich Rebholz-Schuhmann, Antonio Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B Laurila, Christopher JO Baker, Cheng-Ju Kuo, Simone Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura I Furlong, Michael Rautschka, Mariana Neves, Alberto Pascual-Montano, Qi Wei, Nigel Collier, Md Chowdhury, Alberto Lavelli, Rafael Berlanga, Roser Morante, Vincent Van Asch, Walter Daelemans, José Marina, Erik van Mulligen, Jan Kors, Udo Hahn et al. Journal of Biomedical Semantics 2011, 2(Suppl 5):S11 (6 October 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central


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