Articles

Journal of Biomedical Semantics publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 2 Supplement 2

Proceedings of the Bio-Ontologies Special Interest Group Meeting 2010

Proceedings

Bio-Ontologies 2010: Semantic Applications in Life Sciences

Boston, MA, USA

9-10 July 2010

Edited by Larisa Soldatova, Susanna-Assunta Sansone, Susie Stephens and Nigam H Shah

Conference website

Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting

Larisa N Soldatova, Susanna-Assunta Sansone, Susie M Stephens, Nigam H Shah Journal of Biomedical Semantics 2011, 2(Suppl 2):I1 (17 May 2011)

Abstract | Full text | PDF | PubMed

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside

Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, Timothy Lebo, Scott M Marshall, James P McCusker, Deborah L McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L Powers, Eric Prud’hommeaux, Matthias Samwald, Lynn Schriml, Peter J Tonellato, Patricia L Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier Journal of Biomedical Semantics 2011, 2(Suppl 2):S1 (17 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

How orthogonal are the OBO Foundry ontologies?

Amir Ghazvinian, Natalya F Noy, Mark A Musen Journal of Biomedical Semantics 2011, 2(Suppl 2):S2 (17 May 2011)

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HyQue: evaluating hypotheses using Semantic Web technologies

Alison Callahan, Michel Dumontier, Nigam H Shah Journal of Biomedical Semantics 2011, 2(Suppl 2):S3 (17 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

An open annotation ontology for science on web 3.0

Paolo Ciccarese, Marco Ocana, Leyla Garcia Castro, Sudeshna Das, Tim Clark Journal of Biomedical Semantics 2011, 2(Suppl 2):S4 (17 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Automating generation of textual class definitions from OWL to English

Robert Stevens, James Malone, Sandra Williams, Richard Power, Allan Third Journal of Biomedical Semantics 2011, 2(Suppl 2):S5 (17 May 2011)

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Scalable representations of diseases in biomedical ontologies

Stefan Schulz, Kent Spackman, Andrew James, Cristian Cocos, Martin Boeker Journal of Biomedical Semantics 2011, 2(Suppl 2):S6 (17 May 2011)

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Developing a kidney and urinary pathway knowledge base

Simon Jupp, Julie Klein, Joost Schanstra, Robert Stevens Journal of Biomedical Semantics 2011, 2(Suppl 2):S7 (17 May 2011)

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Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology

Arzucan Özgür, Zuoshuang Xiang, Dragomir R Radev, Yongqun He Journal of Biomedical Semantics 2011, 2(Suppl 2):S8 (17 May 2011)

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Representation of research hypotheses

Larisa N Soldatova, Andrey Rzhetsky Journal of Biomedical Semantics 2011, 2(Suppl 2):S9 (17 May 2011)

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Integration and publication of heterogeneous text-mined relationships on the Semantic Web

Adrien Coulet, Yael Garten, Michel Dumontier, Russ B Altman, Mark A Musen, Nigam H Shah Journal of Biomedical Semantics 2011, 2(Suppl 2):S10 (17 May 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central