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	1. 13200 Accesses	Review The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord Barboza, Raoul JP Bonnal, Richard Bruskiewich, Jan C Bryne, José M Fernández, Akira Funahashi, Paul MK Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard Holland, Yoshinobu Kano, Edward A Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehvaslaiho et al. Journal of Biomedical Semantics 2010, 1:8 (21 August 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	2. 11292 Accesses	Research Simple tricks for improving pattern-based information extraction from the biomedical literature Quang Nguyen, Domonkos Tikk, Ulf Leser Journal of Biomedical Semantics 2010, 1:9 (24 September 2010) Abstract \| Full text \| PDF \| PubMed
	3. 11249 Accesses	Research Enriching a primary health care version of ICD-10 using SNOMED CT mapping Mikael Nyström, Anna Vikström, Gunnar H Nilsson, Hans Åhlfeldt, Håkan Örman Journal of Biomedical Semantics 2010, 1:7 (17 June 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	4. 11177 Accesses	Research Rewriting and suppressing UMLS terms for improved biomedical term identification Kristina M Hettne, Erik M van Mulligen, Martijn J Schuemie, Bob JA Schijvenaars, Jan A Kors Journal of Biomedical Semantics 2010, 1:5 (31 March 2010) Abstract \| Full text \| PDF \| PubMed
	5. 10978 Accesses	Research Applying the functional abnormality ontology pattern to anatomical functions Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Janet Kelso Journal of Biomedical Semantics 2010, 1:4 (31 March 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	6. 10052 Accesses	Research De-identifying Swedish clinical text - refinement of a gold standard and experiments with Conditional random fields Hercules Dalianis, Sumithra Velupillai Journal of Biomedical Semantics 2010, 1:6 (12 April 2010) Abstract \| Full text \| PDF \| PubMed
	7. 6193 Accesses	Editorial Biomedical Semantics: the Hub for Biomedical Research 2.0 Dietrich Rebholz-Schuhmann, Goran Nenadic Journal of Biomedical Semantics 2010, 1:1 (31 March 2010) Full text \| PDF \| PubMed \| Cited on BioMed Central
	8. 4817 Accesses	Research Foundations for a realist ontology of mental disease Werner Ceusters, Barry Smith Journal of Biomedical Semantics 2010, 1:10 (9 December 2010) Abstract \| Full text \| PDF \| PubMed
	9. 4763 Accesses	Proceedings CiTO, the Citation Typing Ontology David Shotton Journal of Biomedical Semantics 2010, 1(Suppl 1):S6 (22 June 2010) Abstract \| Full text \| PDF \| PubMed
	10. 4199 Accesses	Proceedings Building a biomedical ontology recommender web service Clement Jonquet, Mark A Musen, Nigam H Shah Journal of Biomedical Semantics 2010, 1(Suppl 1):S1 (22 June 2010) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology
	11. 3978 Accesses	Proceedings The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, Timothy Lebo, Scott M Marshall, James P McCusker, Deborah L McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L Powers, Eric Prud’hommeaux, Matthias Samwald, Lynn Schriml, Peter J Tonellato, Patricia L Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier Journal of Biomedical Semantics 2011, 2(Suppl 2):S1 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12. 3735 Accesses	Research Linking the Resource Description Framework to cheminformatics and proteochemometrics Egon L Willighagen, Jonathan Alvarsson, Annsofie Andersson, Martin Eklund, Samuel Lampa, Maris Lapins, Ola Spjuth, Jarl ES Wikberg Journal of Biomedical Semantics 2011, 2(Suppl 1):S6 (7 March 2011) Abstract \| Full text \| PDF \| PubMed
	13. 3494 Accesses	Proceedings An open annotation ontology for science on web 3.0 Paolo Ciccarese, Marco Ocana, Leyla Garcia Castro, Sudeshna Das, Tim Clark Journal of Biomedical Semantics 2011, 2(Suppl 2):S4 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	14. 3193 Accesses	Research What's unusual in online disease outbreak news? Nigel Collier Journal of Biomedical Semantics 2010, 1:2 (31 March 2010) Abstract \| Full text \| PDF \| PubMed
	15. 2791 Accesses	Review The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications Toshiaki Katayama, Mark D Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul JP Bonnal, José M Fernández, Takatomo Fujisawa, Paul MK Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R Kinjo, Fumikazu Konishi, Yulia Kovarskaya et al. Journal of Biomedical Semantics 2011, 2:4 (2 August 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The challenges discussed during the second DBCLS BioHackathon, from data providers, middleware providers, interface designers and end-users perspective.
	16. 2611 Accesses	Research Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports Hutchatai Chanlekha, Nigel Collier Journal of Biomedical Semantics 2010, 1:3 (31 March 2010) Abstract \| Full text \| PDF \| PubMed
	17. 2578 Accesses	Research Semantic validation of the use of SNOMED CT in HL7 clinical documents Stijn Heymans, Matthew McKennirey, Joshua Phillips Journal of Biomedical Semantics 2011, 2:2 (15 July 2011) Abstract \| Full text \| PDF \| PubMed
	18. 2433 Accesses	Proceedings RKB: a Semantic Web knowledge base for RNA Jose Cruz-Toledo, Michel Dumontier, Marc Parisien, François Major Journal of Biomedical Semantics 2010, 1(Suppl 1):S2 (22 June 2010) Abstract \| Full text \| PDF \| PubMed
	19. 2285 Accesses	Database The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation Mark D Wilkinson, Benjamin Vandervalk, Luke McCarthy Journal of Biomedical Semantics 2011, 2:8 (24 October 2011) Abstract \| Full text \| PDF \| PubMed
	20. 2177 Accesses	Research Discovering opinion leaders for medical topics using news articles Siddhartha Jonnalagadda, Ryan Peeler, Philip Topham Journal of Biomedical Semantics 2012, 3:2 (15 March 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An algorithm designed to recognize experts mentioned in news articles and social media allows medical researchers to identify opinion leaders in the field, potentially helping to implement new findings.
	21. 1933 Accesses	Research Protein interaction sentence detection using multiple semantic kernels Tamara Polajnar, Theodoros Damoulas, Mark Girolami Journal of Biomedical Semantics 2011, 2:1 (14 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	22. 1840 Accesses	Research Identifying and relating biological concepts in the Catalogue of Life Andrew C Jones, Richard J White, Ewen R Orme Journal of Biomedical Semantics 2011, 2:7 (17 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The challenge of managing the variability of species names can be addressed with globally unique Life Science Identifiers (LSIDs) to map species names to abstract concepts, which should assist in data integration and interoperability in biomedicine.
	23. 1797 Accesses	Research Biomedical semantics in the Semantic Web Andrea Splendiani, Albert Burger, Adrian Paschke, Paolo Romano, M Marshall Journal of Biomedical Semantics 2011, 2(Suppl 1):S1 (7 March 2011) Abstract \| Full text \| PDF \| PubMed
	24. 1779 Accesses	Proceedings Modeling biomedical experimental processes with OBI Ryan R Brinkman, Mélanie Courtot, Dirk Derom, Jennifer M Fostel, Yongqun He, Phillip Lord, James Malone, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Larisa N Soldatova, Christian J Stoeckert, Jessica A Turner, Jie Zheng, the OBI consortium Journal of Biomedical Semantics 2010, 1(Suppl 1):S7 (22 June 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	25. 1758 Accesses	Proceedings Establishing a distributed system for the simple representation and integration of diverse scientific assertions Matthias Samwald, Holger Stenzhorn Journal of Biomedical Semantics 2010, 1(Suppl 1):S5 (22 June 2010) Abstract \| Full text \| PDF \| PubMed