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	1. 632 Accesses	Proceedings Open semantic annotation of scientific publications using DOMEO Paolo Ciccarese, Marco Ocana, Tim Clark Journal of Biomedical Semantics 2012, 3(Suppl 1):S1 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
	2. 475 Accesses	Proceedings Linking genes to diseases with a SNPedia-Gene Wiki mashup Benjamin M Good, Erik L Clarke, Salvatore Loguercio, Andrew I Su Journal of Biomedical Semantics 2012, 3(Suppl 1):S6 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
	3. 385 Accesses	Research BioLemmatizer: a lemmatization tool for morphological processing of biomedical text Haibin Liu, Tom Christiansen, William A Baumgartner, Karin Verspoor Journal of Biomedical Semantics 2012, 3:3 (1 April 2012) Abstract \| Provisional PDF \| PubMed \| Editor’s summary Morphological analysis of biomedical literature is more effective when performed by a new open source lemmatization tool, BioLemmatizer, which also improves the accuracy of practical information extraction tasks, and outperforms other similar pre-existing software.
	4. 380 Accesses	Research Discovering opinion leaders for medical topics using news articles Siddhartha Jonnalagadda, Ryan Peeler, Philip Topham Journal of Biomedical Semantics 2012, 3:2 (15 March 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An algorithm designed to recognize experts mentioned in news articles and social media allows medical researchers to identify opinion leaders in the field, potentially helping to implement new findings.
	5. 349 Accesses	Proceedings CiTO, the Citation Typing Ontology David Shotton Journal of Biomedical Semantics 2010, 1(Suppl 1):S6 (22 June 2010) Abstract \| Full text \| PDF \| PubMed
	6. 346 Accesses	Proceedings An open annotation ontology for science on web 3.0 Paolo Ciccarese, Marco Ocana, Leyla Garcia Castro, Sudeshna Das, Tim Clark Journal of Biomedical Semantics 2011, 2(Suppl 2):S4 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	7. 226 Accesses	Research Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology Yu Lin, Zuoshuang Xiang, Yongqun He Journal of Biomedical Semantics 2011, 2:9 (31 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The first reported bacterial infectious disease ontology, that provides a brucellosis knowledge-base and supports brucellosis data integration and automated reasoning.
	8. 217 Accesses	Database The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation Mark D Wilkinson, Benjamin Vandervalk, Luke McCarthy Journal of Biomedical Semantics 2011, 2:8 (24 October 2011) Abstract \| Full text \| PDF \| PubMed
	9. 217 Accesses	Research Foundations for a realist ontology of mental disease Werner Ceusters, Barry Smith Journal of Biomedical Semantics 2010, 1:10 (9 December 2010) Abstract \| Full text \| PDF \| PubMed
	10. 191 Accesses	Research Linking the Resource Description Framework to cheminformatics and proteochemometrics Egon L Willighagen, Jonathan Alvarsson, Annsofie Andersson, Martin Eklund, Samuel Lampa, Maris Lapins, Ola Spjuth, Jarl ES Wikberg Journal of Biomedical Semantics 2011, 2(Suppl 1):S6 (7 March 2011) Abstract \| Full text \| PDF \| PubMed
	11. 183 Accesses	Proceedings The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, Timothy Lebo, Scott M Marshall, James P McCusker, Deborah L McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L Powers, Eric Prud’hommeaux, Matthias Samwald, Lynn Schriml, Peter J Tonellato, Patricia L Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier Journal of Biomedical Semantics 2011, 2(Suppl 2):S1 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	12. 178 Accesses	Review The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord Barboza, Raoul JP Bonnal, Richard Bruskiewich, Jan C Bryne, José M Fernández, Akira Funahashi, Paul MK Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard Holland, Yoshinobu Kano, Edward A Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehvaslaiho et al. Journal of Biomedical Semantics 2010, 1:8 (21 August 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	13. 179 Accesses	Short Report An ontology-based exploration of the concepts and relationships in the activities and participation component of the international classification of functioning, disability and health Vincenzo Della Mea, Andrea Simoncello Journal of Biomedical Semantics 2012, 3:1 (28 February 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An ontology-based exploration of the International Classification of Functioning, Disability and Health (ICF) proposes more accurate classifications of components within this tool, which could lead to the development of a more efficient model.
	14. 173 Accesses	Research OMG U got flu? Analysis of shared health messages for bio-surveillance Nigel Collier, Nguyen Son, Ngoc Nguyen Journal of Biomedical Semantics 2011, 2(Suppl 5):S9 (6 October 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Twitter updates could be used to detect emerging disease outbreaks according to this study, which found a correlation between 'self-protective behavior' in Tweets and WHO/NREVSS data for A(H1N1) during the 2009-2010 influenza season.
	15. 161 Accesses	Proceedings OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia E Escher, Monika Batke, Thomas Baier, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg, Barry Hardy Journal of Biomedical Semantics 2012, 3(Suppl 1):S7 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
	16. 159 Accesses	Research Semantic validation of the use of SNOMED CT in HL7 clinical documents Stijn Heymans, Matthew McKennirey, Joshua Phillips Journal of Biomedical Semantics 2011, 2:2 (15 July 2011) Abstract \| Full text \| PDF \| PubMed
	17. 156 Accesses	Proceedings Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes Paea LePendu, Srinivasan V Iyer, Cédrick Fairon, Nigam H Shah Journal of Biomedical Semantics 2012, 3(Suppl 1):S5 (24 April 2012) Abstract \| Full text \| PDF \| PubMed
	18. 155 Accesses	Proceedings Building a biomedical ontology recommender web service Clement Jonquet, Mark A Musen, Nigam H Shah Journal of Biomedical Semantics 2010, 1(Suppl 1):S1 (22 June 2010) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology
	19. 161 Accesses	Review The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications Toshiaki Katayama, Mark D Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul JP Bonnal, José M Fernández, Takatomo Fujisawa, Paul MK Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R Kinjo, Fumikazu Konishi, Yulia Kovarskaya et al. Journal of Biomedical Semantics 2011, 2:4 (2 August 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The challenges discussed during the second DBCLS BioHackathon, from data providers, middleware providers, interface designers and end-users perspective.
	20. 147 Accesses	Research Identifying and relating biological concepts in the Catalogue of Life Andrew C Jones, Richard J White, Ewen R Orme Journal of Biomedical Semantics 2011, 2:7 (17 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The challenge of managing the variability of species names can be addressed with globally unique Life Science Identifiers (LSIDs) to map species names to abstract concepts, which should assist in data integration and interoperability in biomedicine.
	21. 124 Accesses	Research Enriching a primary health care version of ICD-10 using SNOMED CT mapping Mikael Nyström, Anna Vikström, Gunnar H Nilsson, Hans Åhlfeldt, Håkan Örman Journal of Biomedical Semantics 2010, 1:7 (17 June 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	22. 122 Accesses	Research Disjunctive shared information between ontology concepts: application to Gene Ontology Francisco M Couto, Mário J Silva Journal of Biomedical Semantics 2011, 2:5 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
	23. 112 Accesses	Research GOMMA: a component-based infrastructure for managing and analyzing life science ontologies and their evolution Toralf Kirsten, Anika Gross, Michael Hartung, Erhard Rahm Journal of Biomedical Semantics 2011, 2:6 (13 September 2011) Abstract \| Full text \| PDF \| PubMed
	24. 110 Accesses	Research Simple tricks for improving pattern-based information extraction from the biomedical literature Quang Nguyen, Domonkos Tikk, Ulf Leser Journal of Biomedical Semantics 2010, 1:9 (24 September 2010) Abstract \| Full text \| PDF \| PubMed
	25. 108 Accesses	Research Logic-based assessment of the compatibility of UMLS ontology sources Ernesto Jiménez-Ruiz, Bernardo Grau, Ian Horrocks, Rafael Berlanga Journal of Biomedical Semantics 2011, 2(Suppl 1):S2 (7 March 2011) Abstract \| Full text \| PDF \| PubMed