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	1. 272 Accesses	Research Foundations for a realist ontology of mental disease Werner Ceusters, Barry Smith Journal of Biomedical Semantics 2010, 1:10 (9 December 2010) Abstract \| Full text \| PDF \| PubMed
	2. 238 Accesses	Proceedings An open annotation ontology for science on web 3.0 Paolo Ciccarese, Marco Ocana, Leyla Garcia Castro, Sudeshna Das, Tim Clark Journal of Biomedical Semantics 2011, 2(Suppl 2):S4 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	3. 223 Accesses	Research Linguistic scope-based and biological event-based speculation and negation annotations in the BioScope and Genia Event corpora Veronika Vincze, György Szarvas, György Móra, Tomoko Ohta, Richárd Farkas Journal of Biomedical Semantics 2011, 2(Suppl 5):S8 (6 October 2011) Abstract \| Full text \| PDF \| PubMed
	4. 223 Accesses	Research OMG U got flu? Analysis of shared health messages for bio-surveillance Nigel Collier, Nguyen Son, Ngoc Nguyen Journal of Biomedical Semantics 2011, 2(Suppl 5):S9 (6 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Twitter updates could be used to detect emerging disease outbreaks according to this study, which found a correlation between 'self-protective behavior' in Tweets and WHO/NREVSS data for A(H1N1) during the 2009-2010 influenza season.
	5. 222 Accesses	Database The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation Mark D Wilkinson, Benjamin Vandervalk, Luke McCarthy Journal of Biomedical Semantics 2011, 2:8 (24 October 2011) Abstract \| Full text \| PDF \| PubMed
	6. 221 Accesses	Review The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications Toshiaki Katayama, Mark D Wilkinson, Rutger Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul JP Bonnal, José M Fernández, Takatomo Fujisawa, Paul MK Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R Kinjo, Fumikazu Konishi, Yulia Kovarskaya Journal of Biomedical Semantics 2011, 2:4 (2 August 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The challenges discussed during the second DBCLS BioHackathon, from data providers, middleware providers, interface designers and end-users perspective.
	7. 210 Accesses	Research Linking the Resource Description Framework to cheminformatics and proteochemometrics Egon L Willighagen, Jonathan Alvarsson, Annsofie Andersson, Martin Eklund, Samuel Lampa, Maris Lapins, Ola Spjuth, Jarl ES Wikberg Journal of Biomedical Semantics 2011, 2(Suppl 1):S6 (7 March 2011) Abstract \| Full text \| PDF \| PubMed
	8. 200 Accesses	Proceedings CiTO, the Citation Typing Ontology David Shotton Journal of Biomedical Semantics 2010, 1(Suppl 1):S6 (22 June 2010) Abstract \| Full text \| PDF \| PubMed
	9. 198 Accesses	Proceedings The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia Kozlovsky, Timothy Lebo, Scott M Marshall, James P McCusker, Deborah L McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L Powers, Eric Prud’hommeaux, Matthias Samwald, Lynn Schriml, Peter J Tonellato, Patricia L Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier Journal of Biomedical Semantics 2011, 2(Suppl 2):S1 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	10. 187 Accesses	Review The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord Barboza, Raoul JP Bonnal, Richard Bruskiewich, Jan C Bryne, José M Fernández, Akira Funahashi, Paul MK Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard Holland, Yoshinobu Kano, Edward A Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehvaslaiho Journal of Biomedical Semantics 2010, 1:8 (21 August 2010) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	11. 176 Accesses	Research GOMMA: a component-based infrastructure for managing and analyzing life science ontologies and their evolution Toralf Kirsten, Anika Gross, Michael Hartung, Erhard Rahm Journal of Biomedical Semantics 2011, 2:6 (13 September 2011) Abstract \| Full text \| PDF \| PubMed
	12. 164 Accesses	Research Semantic validation of the use of SNOMED CT in HL7 clinical documents Stijn Heymans, Matthew McKennirey, Joshua Phillips Journal of Biomedical Semantics 2011, 2:2 (15 July 2011) Abstract \| Full text \| PDF \| PubMed
	13. 162 Accesses	Research Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology Yu Lin, Zuoshuang Xiang, Yongqun He Journal of Biomedical Semantics 2011, 2:9 (31 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The first reported bacterial infectious disease ontology, that provides a brucellosis knowledge-base and supports brucellosis data integration and automated reasoning.
	14. 160 Accesses	Proceedings Developing a kidney and urinary pathway knowledge base Simon Jupp, Julie Klein, Joost Schanstra, Robert Stevens Journal of Biomedical Semantics 2011, 2(Suppl 2):S7 (17 May 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	15. 148 Accesses	Editorial Biomedical Semantics: the Hub for Biomedical Research 2.0 Dietrich Rebholz-Schuhmann, Goran Nenadic Journal of Biomedical Semantics 2010, 1:1 (31 March 2010) Full text \| PDF \| PubMed \| Cited on BioMed Central
	16. 146 Accesses	Research Identifying and relating biological concepts in the Catalogue of Life Andrew C Jones, Richard J White, Ewen R Orme Journal of Biomedical Semantics 2011, 2:7 (17 October 2011) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The challenge of managing the variability of species names can be addressed with globally unique Life Science Identifiers (LSIDs) to map species names to abstract concepts, which should assist in data integration and interoperability in biomedicine.
	17. 128 Accesses	Research Disjunctive shared information between ontology concepts: application to Gene Ontology Francisco M Couto, Mário J Silva Journal of Biomedical Semantics 2011, 2:5 (31 August 2011) Abstract \| Full text \| PDF \| PubMed
	18. 122 Accesses	Research Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports Hutchatai Chanlekha, Nigel Collier Journal of Biomedical Semantics 2010, 1:3 (31 March 2010) Abstract \| Full text \| PDF \| PubMed
	19. 116 Accesses	Research Mining semantic networks of bioinformatics e-resources from the literature Hammad Afzal, James Eales, Robert Stevens, Goran Nenadic Journal of Biomedical Semantics 2011, 2(Suppl 1):S4 (7 March 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	20. 114 Accesses	Research Enriching a primary health care version of ICD-10 using SNOMED CT mapping Mikael Nyström, Anna Vikström, Gunnar H Nilsson, Hans Åhlfeldt, Håkan Örman Journal of Biomedical Semantics 2010, 1:7 (17 June 2010) Abstract \| Full text \| PDF \| PubMed
	21. 114 Accesses	Research Logic-based assessment of the compatibility of UMLS ontology sources Ernesto Jiménez-Ruiz, Bernardo Grau, Ian Horrocks, Rafael Berlanga Journal of Biomedical Semantics 2011, 2(Suppl 1):S2 (7 March 2011) Abstract \| Full text \| PDF \| PubMed
	22. 106 Accesses	Introduction OBML – Ontologies in Biomedicine and Life Sciences Heinrich Herre, Robert Hoehndorf, Janet Kelso, Frank Loebe, Stefan Schulz Journal of Biomedical Semantics 2011, 2(Suppl 4):I1 (9 August 2011) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central
	23. 102 Accesses	Proceedings Building a biomedical ontology recommender web service Clement Jonquet, Mark A Musen, Nigam H Shah Journal of Biomedical Semantics 2010, 1(Suppl 1):S1 (22 June 2010) Abstract \| Full text \| PDF \| PubMed
	24. 100 Accesses	Research Automatic extraction of semantic relations between medical entities: a rule based approach Asma Ben Abacha, Pierre Zweigenbaum Journal of Biomedical Semantics 2011, 2(Suppl 5):S4 (6 October 2011) Abstract \| Full text \| PDF \| PubMed
	25. 98 Accesses	Research Rewriting and suppressing UMLS terms for improved biomedical term identification Kristina M Hettne, Erik M van Mulligen, Martijn J Schuemie, Bob JA Schijvenaars, Jan A Kors Journal of Biomedical Semantics 2010, 1:5 (31 March 2010) Abstract \| Full text \| PDF \| PubMed